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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34095345_34095549_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34095345 - 34095549
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTACTGAACT
Flanking Amino Acid:
KNASGTIELQVVAGGDVSVI
Intron Amino Acid Position:
1911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.6
0.49
0.9
69.2
36.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
76.3
0.9
1.6
94.51
32

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022916
34003347 - 34097571
94225
ENSAPLT00000038640
34003347 - 34097588
94242
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000035705
34003288 - 34097571
94284
ENSAPLT00000014337
34003347 - 34097571
94225
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000045139
34003288 - 34097571
94284
ENSAPLT00000029758
34003288 - 34097571
94284
ENSAPLT00000044805
34003347 - 34097571
94225