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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34350219_34377035_F

Intron Information:

Intron Rank:
129478
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
34350219 - 34377035
Intron Length:
26817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTACTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATATGTGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.9
36.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
87.6
0.85
0.7
85.2
29.4
Minor 5ss
72.3
0.75
1.7
78.8
35.5
Minor BPS
48.4
-0.1
2.2
65.02
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019649
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048135
34350100 - 34377138
27039