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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_345794_370164_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
345794 - 370164
Intron Length:
24371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
TTTCTCTTTACA
Flanking Amino Acid:
MSLLCVRVKKAKLQGPP
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
92.5
0.96
0.6
87.6
22.6
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
69.4
0.6
1.6
80.69
34.2

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003128
161360 - 370186
208827
ENSAPLT00000003123
161360 - 370186
208827