Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34638166_34638878_R

Intron Information:

Intron Rank:

154344

Intron Class:

major

Intron Phase:

Intron Coordinates:

34638166 - 34638878

Intron Length:

713

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGGGGAGC

5'SS Class:

major

3'SS Sequence:

CTGTGTTTTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TGTTTTTGAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.1

54.8

44.4

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

78.7

0.65

0.9

76.9

37.3

Minor 5ss

25.3

-2.8

3.1

24.6

37.4

Minor BPS

67.2

0.62

1.3

80.96

34.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030543

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040473

34626546 - 34639535

12990

ENSAPLT00000038606

34637111 - 34639535

2425

ENSAPLT00000019170

34635216 - 34639535

4320

ENSAPLT00000047470

34634636 - 34639535

4900

ENSAPLT00000044635

34589711 - 34639535

49825