About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34727448_34739879_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34727448 - 34739879
Intron Length:
12432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGACTAATAAAG
Flanking Amino Acid:
LTQAVSLVVQREKQKAEVKD
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
42
-0.7
1.9
46.39
39

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020810
34725273 - 34908200
182928
ENSAPLT00000035966
34708353 - 34772042
63690
ENSAPLT00000020674
34708353 - 34908835
200483
ENSAPLT00000025583
34719421 - 34772042
52622
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000008011
34725876 - 34908200
182325
ENSAPLT00000025069
34725273 - 34778976
53704
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000036314
34725134 - 34908200
183067