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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34739965_34756849_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34739965 - 34756849
Intron Length:
16885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATTTTTCTAATA
Flanking Amino Acid:
KDSKIETLEQRLSGQQQEIN
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
77.9
0.63
0.9
74.8
34.3
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
62.1
0.38
1.6
73.69
31.8

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020674
34708353 - 34908835
200483
ENSAPLT00000025583
34719421 - 34772042
52622
ENSAPLT00000008011
34725876 - 34908200
182325
ENSAPLT00000025069
34725273 - 34778976
53704
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000036314
34725134 - 34908200
183067
ENSAPLT00000020810
34725273 - 34908200
182928
ENSAPLT00000035966
34708353 - 34772042
63690