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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34756985_34757572_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34756985 - 34757572
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTGA
5'SS Class:
major
3'SS Sequence:
TACTGTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATCG
Flanking Amino Acid:
KFKDKSEELKDTEECAQKKE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70
36.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.1
0.65
0.9
72.5
37.5
Minor 5ss
45
-0.5
2.6
58.5
46
Minor BPS
57.6
0.1
2.1
70.73
42.9

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020810
34725273 - 34908200
182928
ENSAPLT00000035966
34708353 - 34772042
63690
ENSAPLT00000020674
34708353 - 34908835
200483
ENSAPLT00000025583
34719421 - 34772042
52622
ENSAPLT00000008011
34725876 - 34908200
182325
ENSAPLT00000025069
34725273 - 34778976
53704
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000036314
34725134 - 34908200
183067