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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34766996_34771788_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34766996 - 34771788
Intron Length:
4793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CATTATTTATTT
Flanking Amino Acid:
SQKERDMTRTKEQEKWHSEG
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
52.3
0.15
1.8
69.6
41.9

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035966
34708353 - 34772042
63690
ENSAPLT00000025583
34719421 - 34772042
52622