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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34786881_34803063_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34786881 - 34803063
Intron Length:
16183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATTATAC
5'SS Class:
weak_major
3'SS Sequence:
CCTTTAGTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTAACG
Flanking Amino Acid:
QLQQAHDALNRCGNSACYFS
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.1
59.6
33.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
65.1
0.34
1
61.7
39
Minor 5ss
46.8
-0.3
2.8
63.4
41.6
Minor BPS
72.9
0.58
1.7
76.66
40.7

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020810
34725273 - 34908200
182928