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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34786914_34796570_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34786914 - 34796570
Intron Length:
9657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TATCATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTTACTAATA
Flanking Amino Acid:
LYQDSSHELQVFQQPSLGEL
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78
0.63
0.9
70
40.8
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
51.9
0.05
1.9
68.73
37.8

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000020674
34708353 - 34908835
200483
ENSAPLT00000008011
34725876 - 34908200
182325