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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34786914_34796597_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34786914 - 34796597
Intron Length:
9684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTAGGTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GGTATTTCAACA
Flanking Amino Acid:
LYQDSSHELQLECLITMQKS
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
48.6
-0
1.8
61.9
43.3
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
52.4
0.07
1.5
61.7
38.1

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036314
34725134 - 34908200
183067