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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34808551_34811250_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
34808551 - 34811250
Intron Length:
2700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAGCA
5'SS Class:
major
3'SS Sequence:
TGCCACAGTTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TATTCTTTAGAT
Flanking Amino Acid:
LKEQLKQWEEESILFESRNV
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.7
32
Major BPS
79.2
0.72
1
75
40
Major PPT
58.8
0.2
1
55.3
39.8
Minor 5ss
25.3
-2.8
3.1
30.9
42.5
Minor BPS
66.3
0.59
1.6
82.66
38.2

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036314
34725134 - 34908200
183067