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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34842806_34845693_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34842806 - 34845693
Intron Length:
2888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
EGKRQRYNKKSHSKNKDVEK
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
82.1
30.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.2
0.72
0.8
82
34.8
Minor 5ss
42.8
-0.8
2.7
59.2
45.4
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000020674
34708353 - 34908835
200483