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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34846674_34870183_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34846674 - 34870183
Intron Length:
23510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TGTTTGTAAAAC
Flanking Amino Acid:
RLQTNKLTIQVLTSNLAKWQ
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.9
35.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
65
0.34
1.1
59.9
44.1
Minor 5ss
37.3
-1.4
3.3
50.9
45.8
Minor BPS
46.4
-0.2
2.3
63.65
41.9

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000020674
34708353 - 34908835
200483
ENSAPLT00000008011
34725876 - 34908200
182325
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000036314
34725134 - 34908200
183067