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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34870349_34873639_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34870349 - 34873639
Intron Length:
3291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACAGAA
5'SS Class:
major
3'SS Sequence:
TTCTCCAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCTCCAATA
Flanking Amino Acid:
EMKQMQCKLKNSNNEITKQS
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
67.4
33.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
71.8
0.49
0.9
66.7
33.2
Minor 5ss
29.8
-2.3
3.3
37.8
47
Minor BPS
53.9
0.12
1.8
69.64
36.6

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000020674
34708353 - 34908835
200483