About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34873738_34875470_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34873738 - 34875470
Intron Length:
1733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGCAGTGTAACT
Flanking Amino Acid:
KEEQIRELQAKISRLERDLN
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.4
0.75
0.7
81.6
23.4
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
44.8
-0.3
2.3
64.7
45.9

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000020674
34708353 - 34908835
200483