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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34877444_34877782_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34877444 - 34877782
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAG
5'SS Class:
major
3'SS Sequence:
CGATGTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTGTGTCACT
Flanking Amino Acid:
HKTKDELEKKDVKLSNLESK
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
63.7
37.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
70.8
0.47
1
66.2
43.9
Minor 5ss
42.7
-0.8
3
55.2
49
Minor BPS
44.6
-0.3
2.6
72.26
45

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000020810
34725273 - 34908200
182928
ENSAPLT00000020674
34708353 - 34908835
200483
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000008011
34725876 - 34908200
182325
ENSAPLT00000036314
34725134 - 34908200
183067