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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34877969_34898357_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34877969 - 34898357
Intron Length:
20389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAATT
5'SS Class:
major
3'SS Sequence:
TTGCATCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
ATTGGTTTATTT
Flanking Amino Acid:
KVEEFMTFVKALSTELQHSI
Intron Amino Acid Position:
1015

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
78.4
35.4
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
78.8
0.65
0.9
69.7
41.2
Minor 5ss
41.9
-0.9
2.9
58.4
45.8
Minor BPS
48.1
-0
2
69.31
42.7

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000020810
34725273 - 34908200
182928
ENSAPLT00000020674
34708353 - 34908835
200483
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000008011
34725876 - 34908200
182325
ENSAPLT00000036314
34725134 - 34908200
183067