Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34898544_34899930_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34898544 - 34899930

Intron Length:

1387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTATTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

ATTTTTCTATTT

Flanking Amino Acid:

EEILEVEDDEETAKTQMESE

Intron Amino Acid Position:

1077

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

86.6

0.82

0.7

85.7

27.6

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

50.4

0.09

1.8

74.15

37.3

Associated Gene:

Gene:

CNTLN

Ensembl Gene ID:

ENSAPLG00000007696

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020674

34708353 - 34908835

200483

ENSAPLT00000039032

34708353 - 34908835

200483

ENSAPLT00000008011

34725876 - 34908200

182325

ENSAPLT00000036314

34725134 - 34908200

183067

ENSAPLT00000024677

34708353 - 34908835

200483

ENSAPLT00000020810

34725273 - 34908200

182928