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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34900009_34908098_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34900009 - 34908098
Intron Length:
8090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTAAAT
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTA
Flanking Amino Acid:
HKIQKLLEAQFPFATYLMDA
Intron Amino Acid Position:
1103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.2
65.8
39.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
30.5
-2.2
3
41.3
44.6
Minor BPS
72.8
0.71
1.5
82.43
32.9

Associated Gene:

Gene:
CNTLN
Ensembl Gene ID:
ENSAPLG00000007696
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024677
34708353 - 34908835
200483
ENSAPLT00000020810
34725273 - 34908200
182928
ENSAPLT00000020674
34708353 - 34908835
200483
ENSAPLT00000039032
34708353 - 34908835
200483
ENSAPLT00000008011
34725876 - 34908200
182325
ENSAPLT00000036314
34725134 - 34908200
183067