Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35020479_35021276_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35020479 - 35021276

Intron Length:

798

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGTCC

5'SS Class:

major

3'SS Sequence:

TTTTGTTCTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

CTGTGCTTACTT

Flanking Amino Acid:

LHDKDLREIQHHLKKMEGRR

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

37.3

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

90.6

0.91

0.7

28.1

Minor 5ss

44.2

-0.6

44.7

Minor BPS

51.6

0.13

2.1

70.86

46.8

Associated Gene:

Gene:

SH3GL2

Ensembl Gene ID:

ENSAPLG00000007190

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034242

34939921 - 35025105

85185

ENSAPLT00000007500

35011051 - 35027698

16648