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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35206936_35382549_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35206936 - 35382549
Intron Length:
175614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGACTC
5'SS Class:
major
3'SS Sequence:
TCCCTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
LLNNHKTEDPSSRTARSEED
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
61.1
43.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78.3
0.64
0.7
76.3
25.8
Minor 5ss
35.6
-1.6
3.5
51.7
45.1
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048526
35090704 - 35504470
413767
ENSAPLT00000025609
35090704 - 35504470
413767
ENSAPLT00000006867
35175210 - 35504470
329261