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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35365019_35382549_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35365019 - 35382549
Intron Length:
17531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
TCCCTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
GTLLLASLLLSSRTARSEED
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.9
34.6
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78.3
0.64
0.7
76.3
25.8
Minor 5ss
34.8
-1.7
3.3
47.1
43.6
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020470
35364713 - 35504470
139758