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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35410854_35430270_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35410854 - 35430270
Intron Length:
19417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TCTCTCTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCACATTGAACT
Flanking Amino Acid:
LDMCISGLCQIVGCDRQLGS
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.4
38.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
78.2
0.63
0.9
72.6
37.6
Minor 5ss
33.3
-1.9
3.2
39.9
40.2
Minor BPS
51.4
0.12
1.6
68.42
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006867
35175210 - 35504470
329261
ENSAPLT00000048526
35090704 - 35504470
413767
ENSAPLT00000025609
35090704 - 35504470
413767
ENSAPLT00000020470
35364713 - 35504470
139758