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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35430398_35436351_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35430398 - 35436351
Intron Length:
5954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
GTCTTCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TGTTTGTTCACT
Flanking Amino Acid:
QYKSQLSENKLDDTVVAIPY
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
69.7
43.7
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
78.1
0.63
0.8
72.3
32.5
Minor 5ss
47
-0.3
2.9
63.8
41.3
Minor BPS
52.4
0.16
2.4
79.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048526
35090704 - 35504470
413767
ENSAPLT00000025609
35090704 - 35504470
413767
ENSAPLT00000020470
35364713 - 35504470
139758
ENSAPLT00000006867
35175210 - 35504470
329261