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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35436427_35439491_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35436427 - 35439491
Intron Length:
3065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTTATTAATT
Flanking Amino Acid:
RLVLKGPDHLYLETKTLQGV
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.4
0.57
1.1
69.6
45.4
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
70
0.71
1.5
84.39
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048526
35090704 - 35504470
413767
ENSAPLT00000025609
35090704 - 35504470
413767
ENSAPLT00000020470
35364713 - 35504470
139758
ENSAPLT00000006867
35175210 - 35504470
329261