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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35446900_35448619_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35446900 - 35448619
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
CTGCATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATTTCTTCCACT
Flanking Amino Acid:
FFPCSASCGGGYQLTSAECF
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
72.9
0.52
1
65.9
39.3
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
59.9
0.39
2
82.49
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048526
35090704 - 35504470
413767
ENSAPLT00000025609
35090704 - 35504470
413767
ENSAPLT00000020470
35364713 - 35504470
139758
ENSAPLT00000006867
35175210 - 35504470
329261