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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35448759_35461832_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35448759 - 35461832
Intron Length:
13074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCAG
5'SS Class:
major
3'SS Sequence:
CGCTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TTTTCCTGACAT
Flanking Amino Acid:
QECNLDPCPARWESTPWTAC
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.3
68.8
43.8
Major BPS
65
0.37
1.3
75
40
Major PPT
80
0.68
0.8
74.8
33.6
Minor 5ss
29
-2.4
2.6
32.3
42.2
Minor BPS
64
0.52
1.9
86.48
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048526
35090704 - 35504470
413767