About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35462038_35463724_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35462038 - 35463724
Intron Length:
1687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATGAGT
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CATTCCTCATAT
Flanking Amino Acid:
PKWLAQEWSPCTVTCGQGLR
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
66.6
44.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
34.5
-1.8
3.3
49.6
46.4
Minor BPS
50.7
0.1
1.9
71
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025609
35090704 - 35504470
413767
ENSAPLT00000020470
35364713 - 35504470
139758
ENSAPLT00000006867
35175210 - 35504470
329261
ENSAPLT00000048526
35090704 - 35504470
413767