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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35479618_35480474_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35479618 - 35480474
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
CTTTCCCTCACA
Flanking Amino Acid:
EEPSLLIGFSRFIPEAWSSC
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
70
0.5
1
59.6
38.6
Major PPT
82.1
0.72
0.7
76.2
25.9
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
59.2
0.28
2.1
75.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048526
35090704 - 35504470
413767
ENSAPLT00000025609
35090704 - 35504470
413767
ENSAPLT00000020470
35364713 - 35504470
139758
ENSAPLT00000006867
35175210 - 35504470
329261