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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35485488_35504371_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35485488 - 35504371
Intron Length:
18884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCGTC
5'SS Class:
strong_major
3'SS Sequence:
GACCCTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTCTCCTGACCC
Flanking Amino Acid:
ACSLDPCPPKMGDWEMEHLQ
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.3
37.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
70.7
0.47
0.9
63.8
36.5
Minor 5ss
47
-0.3
3.1
66.9
44.7
Minor BPS
56.5
0.18
1.8
66.78
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006616
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025609
35090704 - 35504470
413767
ENSAPLT00000020470
35364713 - 35504470
139758
ENSAPLT00000006867
35175210 - 35504470
329261
ENSAPLT00000048526
35090704 - 35504470
413767