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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35516111_35522908_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35516111 - 35522908
Intron Length:
6798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAG
U12 Branch Point Sequence:
TTCTGCTTTACT
Flanking Amino Acid:
KNGEEVKYNDRMLLQPDDSL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
59
0.22
1.5
67.7
36.5
Major PPT
78.8
0.65
0.9
70.4
40
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
62.9
0.49
2.1
84.03
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006493
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006729
35515617 - 35563575
47959