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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35523037_35530370_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35523037 - 35530370
Intron Length:
7334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GCTTCTTTTATA
Flanking Amino Acid:
DSVSIAVTLAGKPLIKASRA
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
78.8
35.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87.6
0.85
0.8
84
30
Minor 5ss
35.2
-1.7
3.8
55.5
48.6
Minor BPS
60.9
0.34
1.6
67.32
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006493
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006729
35515617 - 35563575
47959