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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35560955_35562144_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35560955 - 35562144
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
CTTCTGCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTGAC
U12 Branch Point Sequence:
TTCTGCTCATAG
Flanking Amino Acid:
VSSDQCSALPRPLSTQNCWT
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
48.3
-0.1
1.3
40.8
41.4
Major PPT
73.9
0.54
0.8
68.4
32
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
43
-0.6
2.2
52.64
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006493
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006729
35515617 - 35563575
47959