About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35562366_35563468_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35562366 - 35563468
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTACGTTCC
5'SS Class:
major
3'SS Sequence:
TCTCCTTTGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAC
U12 Branch Point Sequence:
GCCTCATCACCG
Flanking Amino Acid:
QRCNITPCENMECRDTTRYC
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
61
39
Major BPS
65.7
0.39
1.1
67.9
37.7
Major PPT
74.5
0.55
0.9
72.7
32
Minor 5ss
42.6
-0.8
3
58.9
39.6
Minor BPS
42.8
-0.6
2.1
45.31
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006493
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006729
35515617 - 35563575
47959