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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35581353_35584221_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35581353 - 35584221
Intron Length:
2869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
TTATTATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTCACA
Flanking Amino Acid:
RYPWKASQLQREIT*
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
72.4
32
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.9
0.72
0.8
76.8
36.1
Minor 5ss
40.6
-1.1
2.8
48.8
41.6
Minor BPS
55.3
0.16
2
73.02
38.6

Associated Gene:

Gene:
HAUS6
Ensembl Gene ID:
ENSAPLG00000006057
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042971
35581150 - 35630244
49095