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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35618193_35618570_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35618193 - 35618570
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTGTTTCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TAAATTTTACCT
Flanking Amino Acid:
QQIPRTPENLLTEIRSSWRK
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.4
68.9
43.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.9
0.65
0.9
78.6
35
Minor 5ss
38.7
-1.3
3
45.7
42.5
Minor BPS
54.6
0.22
1.6
70.15
40.8

Associated Gene:

Gene:
HAUS6
Ensembl Gene ID:
ENSAPLG00000006057
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021136
35583067 - 35630244
47178
ENSAPLT00000006293
35615641 - 35630244
14604
ENSAPLT00000042971
35581150 - 35630244
49095
ENSAPLT00000026643
35615641 - 35630396
14756