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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35618707_35620455_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35618707 - 35620455
Intron Length:
1749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGGAAA
5'SS Class:
major
3'SS Sequence:
TAACATCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTTCTAACA
Flanking Amino Acid:
KKATEELAEEVAKTVTSESP
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
76
34.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.3
0.46
0.9
62.2
39.1
Minor 5ss
27.9
-2.5
2.8
31.2
42.5
Minor BPS
64.4
0.45
1.6
75.11
36.7

Associated Gene:

Gene:
HAUS6
Ensembl Gene ID:
ENSAPLG00000006057
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021136
35583067 - 35630244
47178
ENSAPLT00000006293
35615641 - 35630244
14604
ENSAPLT00000042971
35581150 - 35630244
49095
ENSAPLT00000026643
35615641 - 35630396
14756