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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35621331_35622763_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35621331 - 35622763
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGACT
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTAAAAT
Flanking Amino Acid:
MDNSTLQPTRWISSVSLDLS
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.7
39
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.1
0.83
0.7
86.1
27.7
Minor 5ss
35.1
-1.7
3.2
47.1
42.5
Minor BPS
69.5
0.69
1.7
88.72
36.1

Associated Gene:

Gene:
HAUS6
Ensembl Gene ID:
ENSAPLG00000006057
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026643
35615641 - 35630396
14756
ENSAPLT00000021136
35583067 - 35630244
47178
ENSAPLT00000006293
35615641 - 35630244
14604
ENSAPLT00000042971
35581150 - 35630244
49095