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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35622858_35623304_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35622858 - 35623304
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTACTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
AATACTAAAACT
Flanking Amino Acid:
VSFQLEIPLLDIYDSICEKN
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.1
36.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
75.9
0.58
0.8
69.4
36
Minor 5ss
38.1
-1.3
3.1
49.4
46.8
Minor BPS
48.5
-0
1.9
69.43
41.1

Associated Gene:

Gene:
HAUS6
Ensembl Gene ID:
ENSAPLG00000006057
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026643
35615641 - 35630396
14756
ENSAPLT00000021136
35583067 - 35630244
47178
ENSAPLT00000006293
35615641 - 35630244
14604
ENSAPLT00000042971
35581150 - 35630244
49095