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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35623402_35624003_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35623402 - 35624003
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTCTTTTGATA
Flanking Amino Acid:
PYSLKRGQDPDLDLLEAVSC
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.9
39.9
Major BPS
74.2
0.6
1
67
39.4
Major PPT
81.3
0.7
0.9
80.1
32
Minor 5ss
39.6
-1.2
2.9
57.1
41.1
Minor BPS
66.8
0.52
1.1
74.7
30

Associated Gene:

Gene:
HAUS6
Ensembl Gene ID:
ENSAPLG00000006057
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026643
35615641 - 35630396
14756
ENSAPLT00000021136
35583067 - 35630244
47178
ENSAPLT00000006293
35615641 - 35630244
14604
ENSAPLT00000042971
35581150 - 35630244
49095