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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35624892_35625384_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
35624892 - 35625384
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GGAATATCTCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TCTTTTGGAATA
Flanking Amino Acid:
ADRVESEIHEVCTGNLYEGE
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
51.7
0.04
1.2
46.3
45
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
47.7
-0.1
2
62.75
38.6

Associated Gene:

Gene:
HAUS6
Ensembl Gene ID:
ENSAPLG00000006057
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026643
35615641 - 35630396
14756
ENSAPLT00000021136
35583067 - 35630244
47178
ENSAPLT00000006293
35615641 - 35630244
14604
ENSAPLT00000042971
35581150 - 35630244
49095