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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35627389_35629744_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35627389 - 35629744
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
AACTTTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TATACCTCAATT
Flanking Amino Acid:
WIQCAQPKCSGSDTSSTEAV
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
65
0.34
0.9
63.3
37.6
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
68.7
0.66
1.5
82.75
38.1

Associated Gene:

Gene:
HAUS6
Ensembl Gene ID:
ENSAPLG00000006057
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026643
35615641 - 35630396
14756