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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35629169_35629744_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
35629169 - 35629744
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCATGGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATGGAAA
Flanking Amino Acid:
LDPVRAAKVFRDCLLPEQIT
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
49
-0
1.2
48.8
42.8
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
47.3
-0.2
2
65.71
40.2

Associated Gene:

Gene:
HAUS6
Ensembl Gene ID:
ENSAPLG00000006057
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042971
35581150 - 35630244
49095
ENSAPLT00000021136
35583067 - 35630244
47178
ENSAPLT00000006293
35615641 - 35630244
14604