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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35637967_35638650_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35637967 - 35638650
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGATTATTATGT
Flanking Amino Acid:
NDGDESHSAEHIESRTLAIA
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
46.5
-0.1
2.1
66.38
43.9

Associated Gene:

Gene:
PLIN2
Ensembl Gene ID:
ENSAPLG00000005745
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005975
35637565 - 35641817
4253