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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35640852_35641512_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35640852 - 35641512
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
ATTTCTTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AAAACCTAAAAT
Flanking Amino Acid:
MPIIQKLEPQIVVANNYACM
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.6
38
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
78
0.63
0.7
73.5
30.9
Minor 5ss
31.8
-2.1
3.3
38.6
40.8
Minor BPS
51.2
0.12
1.8
67.16
42.6

Associated Gene:

Gene:
PLIN2
Ensembl Gene ID:
ENSAPLG00000005745
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005975
35637565 - 35641817
4253