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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35641709_35641787_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35641709 - 35641787
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTCTCTTTAAAC
Flanking Amino Acid:
MALAAIDPQQNIVSRVANLP
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
76.1
0.59
0.9
73.4
34.9
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
75.3
0.77
1.3
79.33
36

Associated Gene:

Gene:
PLIN2
Ensembl Gene ID:
ENSAPLG00000005745
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005975
35637565 - 35641817
4253