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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35705899_35711998_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35705899 - 35711998
Intron Length:
6100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGACTT
5'SS Class:
major
3'SS Sequence:
TTCCTGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
ATGTGTGTAATA
Flanking Amino Acid:
GRDKPPLTDIGVLYEGKERI
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.5
40.2
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
82
0.72
0.8
76.5
32.1
Minor 5ss
32
-2.1
3.3
40.2
45.4
Minor BPS
46.3
-0.2
2.3
60.63
40.6

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045697
35705571 - 35754659
49089
ENSAPLT00000021519
35705571 - 35754659
49089
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995