About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35712252_35713183_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35712252 - 35713183
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
TTTGCTCCAAGA
Flanking Amino Acid:
KVDKNLNCGMWGSSVYLCYK
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
45.5
-0.3
2.2
63.87
42.8

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045697
35705571 - 35754659
49089
ENSAPLT00000021519
35705571 - 35754659
49089
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995