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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35713254_35715992_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35713254 - 35715992
Intron Length:
2739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCATAATGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
AATTCACTAACT
Flanking Amino Acid:
PASNSIAYKAGLIFRYPQEN
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
57
0.16
1.1
57
36.4
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
61.5
0.44
1.9
82.38
37.8

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021519
35705571 - 35754659
49089
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995
ENSAPLT00000045697
35705571 - 35754659
49089